再压缩前，要设置linux模式， 需要使用第三方ant-1.6.5.jar
如果是文件目录，则
ZipEntry zipEntry=new ZipEntry(basePath + System.getProperties().getProperty(“file.separator”));
zipEntry.setUnixMode(755);//解决linux乱码

如果是文件，则
ZipEntry zipEntry=new ZipEntry(base);
zipEntry.setUnixMode(644);//解决linux乱码

然后在输出时强制设置编码:
ZipOutputStream out = new ZipOutputStream(new FileOutputStream(
zipFileName));
out.setEncoding(“GBK”);//解决linux乱码

全部代码如下:

import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.OutputStream;

import org.apache.tools.zip.ZipEntry;
import org.apache.tools.zip.ZipOutputStream;

import org.apache.tools.ant.Project;  

import org.apache.tools.ant.taskdefs.Expand;

/**
 * 文件夹压缩，支持win和linux
 * @author wlzhang
 *
 */
public class ZipUtil
{
    /**
     * @param inputFileName
     *            输入一个文件夹
     * @param zipFileName
     *            输出一个压缩文件夹，打包后文件名字
     * @throws Exception
     */
    public static OutputStream zip(String inputFileName, String zipFileName) throws Exception
    {
        return zip(zipFileName, new File(inputFileName));
    }

    private static OutputStream zip(String zipFileName, File inputFile) throws Exception
    {
        ZipOutputStream out = new ZipOutputStream(new FileOutputStream(
                zipFileName));
        out.setEncoding("UTF-8");//解决linux乱码  根据linux系统的实际编码设置,可以使用命令 vi/etc/sysconfig/i18n 查看linux的系统编码
        zip(out, inputFile, "");
        out.close();
        return out;
    }

    private static void zip(ZipOutputStream out, File f, String base) throws Exception
    {
        if (f.isDirectory())
        { // 判断是否为目录
            File[] fl = f.listFiles();
            // out.putNextEntry(new org.apache.tools.zip.ZipEntry(base + "/"));
//            out.putNextEntry(new ZipEntry(base + "/"));
            ZipEntry zipEntry=new ZipEntry(base + System.getProperties().getProperty("file.separator"));
            zipEntry.setUnixMode(755);//解决linux乱码
            out.putNextEntry(zipEntry);
//            base = base.length() == 0 ? "" : base + "/";
            base = base.length() == 0 ? "" : base + System.getProperties().getProperty("file.separator");
            for (int i = 0; i < fl.length; i++)
            {
                zip(out, fl[i], base + fl[i].getName());
            }
        }
        else
        { // 压缩目录中的所有文件
            // out.putNextEntry(new org.apache.tools.zip.ZipEntry(base));
            ZipEntry zipEntry=new ZipEntry(base);
            zipEntry.setUnixMode(644);//解决linux乱码
            out.putNextEntry(zipEntry);
            FileInputStream in = new FileInputStream(f);
            int b;
            while ((b = in.read()) != -1)
            {
                out.write(b);
            }
            in.close();
        }
    }

    private static void unzip(String sourceZip,String destDir) throws Exception{  

        try{  

            Project p = new Project();  

            Expand e = new Expand();  

            e.setProject(p);  

            e.setSrc(new File(sourceZip));  

            e.setOverwrite(false);  

            e.setDest(new File(destDir));  

            /* 

            ant下的zip工具默认压缩编码为UTF-8编码， 

            而winRAR软件压缩是用的windows默认的GBK或者GB2312编码 

            所以解压缩时要制定编码格式 

            */ 

            e.setEncoding("UTF-8");  //根据linux系统的实际编码设置

            e.execute();  

        }catch(Exception e){  

            throw e;  

        }  

    }  


}