I have a 2D matrix and I want to take norm of each row. But when I use numpy.linalg.norm(X) directly, it takes the norm of the whole matrix.
I can take norm of each row by using a for loop and then taking norm of each X[i], but it takes a huge time since I have 30k rows.
Any suggestions to find a quicker way? Or is it possible to apply np.linalg.norm to each row of a matrix?
For numpy 1.9+
Note that, as perimosocordiae shows, as of NumPy version 1.9, np.linalg.norm(x, axis=1) is the fastest way to compute the L2-norm.
For numpy < 1.9
If you are computing an L2-norm, you could compute it directly (using the axis=-1 argument to sum along rows):
np.sum(np.abs(x)**2,axis=-1)**(1./2)
Lp-norms can be computed similarly of course.
It is considerably faster than np.apply_along_axis, though perhaps not as convenient:
In [48]: %timeit np.apply_along_axis(np.linalg.norm, 1, x)
1000 loops, best of 3: 208 us per loop
In [49]: %timeit np.sum(np.abs(x)**2,axis=-1)**(1./2)
100000 loops, best of 3: 18.3 us per loop
Other ord forms of norm can be computed directly too (with similar speedups):
In [55]: %timeit np.apply_along_axis(lambda row:np.linalg.norm(row,ord=1), 1, x)
1000 loops, best of 3: 203 us per loop
In [54]: %timeit np.sum(abs(x), axis=-1)
100000 loops, best of 3: 10.9 us per loop
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