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I recently upgraded from Jenkins 1.6 to 2.5. After I did this, I noticed very high CPU usage, sometimes over 300% (there are only 4 cores, so I don't think it could go over 400%). I'm not sure where to begin debugging this, but here's a thread dump and some screenshots from top/htop

htop

top:

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As it turned out, my issue was that several jobs had thousands of old builds. This was fine in Jenkins 1.6 but it's a problem in 2.5 (I guess maybe Jenkins tries to load all the builds into memory when you view the job overview page). To fix it, I just deleted most of the old builds from the problem jobs using this strategy and then reloaded jenkins. Worked like a charm!

I also set the "discard old builds" plugin to keep only the 50 most recent builds, to prevent this from happening again.