星逸飞腾docker镜像(2)vasp和quantum expresso安装
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本文记录了在ARM架构的Ubuntu系统(基于天河星逸飞腾集群arm架构的docker镜像)上使用K8s docker镜像为环境,安装VASP5.4.4和QE 7.5的步骤:1)修改lapack配置并编译;2)处理fox编译问题,添加aarch64支持;3)完成QE主程序编译,启用SCALAPACK和多个插件。文中详细列出了各阶段的配置参数和编译命令,包括编译器设置、路径修改等关键环节,最终成功完成两个计算软件的安装。
一开始编译的是vasp6.4.2,但是一直有个报错,fftw3问题,所以重新装了一个新版fftw3
1. fftw3、hdf5安装
apt-get install fftw3 fftw3-dev
apt-get install libhdf5-dev
2. vasp安装
cp arch/makefile.include.linux_gnu ./makefile.include
vi makefile.include
修改makefile.include中的FC,FCL,CC_LIB,CXX_PARS,CC,CXX、BLAS,LAPACK,SCALAPACK路径,以下为makefile.include文件内容
Precompiler options
CPP_OPTIONS= -DHOST=\"LinuxGNU\" \
-DMPI -DMPI_BLOCK=8000 \
-Duse_collective \
-DscaLAPACK \
-DCACHE_SIZE=4000 \
-Davoidalloc \
-Duse_bse_te \
-Dtbdyn \
-Duse_shmem
CPP = gcc-9 -E -P -C -w $*$(FUFFIX) >$*$(SUFFIX) $(CPP_OPTIONS)
FC = mpif90
FCL = mpif90
FREE = -ffree-form -ffree-line-length-none
FFLAGS = -w
OFLAG = -O2
OFLAG_IN = $(OFLAG)
DEBUG = -O0
LIBDIR = /HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/install/mathlib-gcc9/lib
BLAS = -L$(LIBDIR) -lopenblas
LAPACK = -L$(LIBDIR) -ltmglib -llapack
BLACS =
SCALAPACK = -L/HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/software/scalapack-2.2.2 -lscalapack $(BLACS)
LLIBS = $(SCALAPACK) $(LAPACK) $(BLAS)
FFTW ?= /HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/install/fftw3-gcc9
LLIBS += -L$(FFTW)/lib -lfftw3
INCS = -I$(FFTW)/include
OBJECTS = fftmpiw.o fftmpi_map.o fftw3d.o fft3dlib.o
OBJECTS_O1 += fftw3d.o fftmpi.o fftmpiw.o
OBJECTS_O2 += fft3dlib.o
# For what used to be vasp.5.lib
CPP_LIB = $(CPP)
FC_LIB = $(FC)
CC_LIB = gcc-9
CFLAGS_LIB = -O
FFLAGS_LIB = -O1
FREE_LIB = $(FREE)
OBJECTS_LIB= linpack_double.o getshmem.o
# For the parser library
CXX_PARS = g++-9
LIBS += parser
LLIBS += -Lparser -lparser -lstdc++
# Normally no need to change this
SRCDIR = ../../src
BINDIR = ../../bin
#================================================
# GPU Stuff
CPP_GPU = -DCUDA_GPU -DRPROMU_CPROJ_OVERLAP -DCUFFT_MIN=28 -UscaLAPACK # -DUSE_PINNED_MEMORY
OBJECTS_GPU= fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d_gpu.o fftmpiw_gpu.o
CC = gcc-9
CXX = g++-9
CFLAGS = -fPIC -DADD_ -openmp -DMAGMA_WITH_MKL -DMAGMA_SETAFFINITY -DGPUSHMEM=300 -DHAVE_CUBLAS
CUDA_ROOT ?= /usr/local/cuda
NVCC := $(CUDA_ROOT)/bin/nvcc
CUDA_LIB := -L$(CUDA_ROOT)/lib64 -lnvToolsExt -lcudart -lcuda -lcufft -lcublas
GENCODE_ARCH := -gencode=arch=compute_30,code=\"sm_30,compute_30\" \
-gencode=arch=compute_35,code=\"sm_35,compute_35\" \
-gencode=arch=compute_60,code=\"sm_60,compute_60\"
MPI_INC = /HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/install/openmpi-gcc9/include
make -j 4
3. quantum espresso 安装
3.1 lapack安装
cd external
sh initialize_external_repos.sh
cd lapack
vi make.inc


make blaslib
make cblaslib
make all -j 4
3.2 fox安装
在qe-7.5文件夹执行
mkdir build2 && cd build2
cmake -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpif90 -DQE_LAPACK_INTERNAL=ON -DBLAS_LIBRARIES=/HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/software/qe-7.5/external/lapack/libblas.o -DLAPACK_LIBRARIES=/HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/software/qe-7.5/external/lapack/liblapack.o -DQE_ENABLE_FOX=ON ..
报错fox无法编译,进入external/fox/config文件夹,通过vi查看config.guess文件,添加aarch64选项
CC=mpicc FC=mpifort ./configure
make -j 4 all
3.3 qe-7.5安装
cmake -DCMAKE_C_COMPILER=mpicc -DCMAKE_Fortran_COMPILER=mpif90 -DBLAS_LIBRARIES=/HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/software/qe-7.5/external/lapack/libblas.a -DLAPACK_LIBRARIES=/HOME/nscc-gz/nscc-gz_qmo3/HDD_POOL/software/qe-7.5/external/lapack/liblapack.a -DENABLE_SCALAPACK=ON -DQE_ENABLE_PLUGINS="d3q;gipaw;pw2qmcpack" -DQE_ENABLE_FOX=ON ..
make -j 4 all
make test
安装包
软件安装包链接:[link](https://download.csdn.net/download/weixin_49452153/92281113)
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